Data Availability

The publicly-accessible Google Storage buckets for the image, segmentation, and agglomeration data are as follows:

Public Buckets

  1. 4nm EM: Acquired via multi-beam SEM at a resolution of 4nm*4nm*30nm
    • gs://efish-public/roi450um_aligned/
  2. baseseg: Base Segmentation (mesh, skeletons) at a resolution of 16nm*16nm*30nm
    • gs://efish-public/roi450um_seg32fb16fb_220930/
  3. agglo: automated "agglomerated" reconstruction model (mesh) at a resolution of 16nm*16nm*30nm
    • gs://efish-public/roi450um_seg32fb16fb_220930_v230111c_16_strict_only_spl/
  4. 5025 Proofread bodies: Manually traced and proofread (via eCREST) cells and fragments (mesh) at a resolution of 16nm*16nm*30nm
    • gs://efish-public/roi450um_published_260420/

Processed Data

The processed data (and accompanying files) created and utilized by the accompanying publication [DOI] are archived at the following Zenodo repository.

DOI

The custom code written for processing and analysis of the EM dataset and model utilize this processed data. After downloading and extracting EM_data_published/, place it as a sibling to the code repository as follows: 

your_directory/
          ├── EM_data_published/      ← downloaded data archive from Zenodo
          └── efish_em_ELL/           ← GitHub repository